Error while compiling the Parallel OpenSees on Linux

[anitha]

Dear Sir/Madam,

I am installing OpenSees Parallel version on our linux machine. I have done "PARALLEL_INTERPRETER" option for parallel compilation using MPI library. The Makefile.def I have used and Modified as per compilation guidelines for OpenSeesMP on linux machine.

I got all the required libraries in lib directory. But I am not getting the OpenSees Binary.
As per fmk suggestion in OpenSees community post i've done with the following steps
cd into OpenSees/SRC/tcl and type make tcl. it works.
&
cd into OpenSees/SRC/modelbuiler/tcl and ype make tcl
The error I am getting while compilation is as follows:
/home/panitha/usr/local/mpich2-1.1/mpich2-install/bin/mpicxx -rdynamic -g -pg /home/panitha/OpenSees/SRC/tcl/tclMain.o /home/panitha/OpenSees/SRC/tcl/mpiParameterMain.o /home/panitha/OpenSees/SRC/tcl/commands.o /home/panitha/OpenSees/SRC/modelbuilder/tcl/myCommands.o /home/panitha/OpenSees/SRC/actor/channel/MPI_Channel.o /home/panitha/OpenSees/SRC/actor/machineBroker/MPI_MachineBroker.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSOE.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSolver.o /home/panitha/OpenSees/SRC/domain/subdomain/ActorSubdomain.o /home/panitha/OpenSees/SRC/domain/subdomain/ShadowSubdomain.o /home/panitha/OpenSees/SRC/tcl/TclFeViewer.o /home/panitha/OpenSees/SRC/tcl/TclVideoPlayer.o \
/home/panitha/lib/libOpenSees.a -L/lib /home/panitha/lib/libSuperLU.a /home/panitha/lib/libDistributedSuperLU.a -L/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/DistributedSuperLU.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/DistributedSparseGenColLinSOE.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/mumps/MumpsSOE.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/mumps/MumpsSolver.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/mumps/MumpsParallelSOE.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/mumps/MumpsParallelSolver.o -L/home/panitha/usr/local/scalapack -lscalapack /home/panitha/PARALLEL/BLACS/LIB/blacs.a /home/panitha/PARALLEL/BLACS/LIB/blacsCinit.a /home/panitha/PARALLEL/BLACS/LIB/blacs.a /home/panitha/PARALLEL/BLACS/LIB/blacsF77init.a /home/panitha/PARALLEL/BLACS/LIB/blacs.a /home/panitha/PARALLEL/lapack/liblapack.a /home/panitha/PARALLEL/BLAS/blas.a -L/home/panitha/PARALLEL/mumps/lib -ldmumps -lmumps_common -lpord /home/panitha/usr/local/ParMetis/libparmetis.a /home/panitha/usr/local/ParMetis/libmetis.a -L/home/panitha/usr/local/scalapack -lscalapack /home/panitha/PARALLEL/BLACS/LIB/blacs.a /home/panitha/PARALLEL/BLACS/LIB/blacsCinit.a /home/panitha/PARALLEL/BLACS/LIB/blacs.a /home/panitha/PARALLEL/BLACS/LIB/blacsF77init.a /home/panitha/PARALLEL/BLACS/LIB/blacs.a /home/panitha/PARALLEL/lapack/liblapack.a /home/panitha/PARALLEL/BLAS/blas.a /usr/lib64/libgfortran.so.3 /usr/lib64/libdl.so \
-L/home/panitha/usr/local/mpich2-1.1/mpich2-install/lib -lmpich /usr/lib64/libgfortran.so.3 -L/usr/lib64 -L/usr/lib64 -ldl -lm /home/panitha/lib/libDistributedSuperLU.a /home/panitha/lib/libSuperLU.a /home/panitha/lib/libArpack.a /home/panitha/lib/libAMD.a /home/panitha/lib/libDistributedSuperLU.a /home/panitha/lib/libUmfpack.a /home/panitha/lib/libCSparse.a /home/panitha/PARALLEL/lapack/liblapack.a /home/panitha/PARALLEL/BLAS/blas.a /home/panitha/lib/libCBlas.a /home/panitha/lib/libDistributedSuperLU.a /usr/lib64/libtk8.5.so /usr/lib64/libtcl8.5.so \
-I/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN /home/panitha/lib/libDistributedSuperLU.a /home/panitha/lib/libSuperLU.a -L/home/panitha/usr/local/mpich2-1.1/mpich2-install/lib -lmpich -ldl -lieee -lm -lc -lgfortran -Wl,-rpath,/usr/lib64 -lpng -L/home/panitha/usr/local/mpich2-1.1/mpich2-install/lib -lmpich /home/panitha/lib/libSuperLU.a -L/home/panitha/OpenSees/OTHER/SuperLU_DIST_2.5/SRC -L/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN /home/panitha/lib/libDistributedSuperLU.a -o /home/panitha/bin/OpenSeesMP
/home/panitha/usr/local/mpich2-1.1/mpich2-install/bin/mpicxx -rdynamic -g -pg /home/panitha/OpenSees/SRC/tcl/tclMain.o /home/panitha/OpenSees/SRC/tcl/mpiParameterMain.o /home/panitha/OpenSees/SRC/tcl/commands.o /home/panitha/OpenSees/SRC/modelbuilder/tcl/myCommands.o /home/panitha/OpenSees/SRC/actor/channel/MPI_Channel.o /home/panitha/OpenSees/SRC/actor/machineBroker/MPI_MachineBroker.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSOE.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSolver.o /home/panitha/OpenSees/SRC/domain/subdomain/ActorSubdomain.o /home/panitha/OpenSees/SRC/domain/subdomain/ShadowSubdomain.o /home/panitha/OpenSees/SRC/tcl/TclFeViewer.o /home/panitha/OpenSees/SRC/tcl/TclVideoPlayer.o /home/panitha/lib/libOpenSees.a -L/lib /home/panitha/lib/libSuperLU.a /home/panitha/lib/libDistributedSuperLU.a -L/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/DistributedSuperLU.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/DistributedSparseGenColLinSOE.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/mumps/MumpsSOE.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/mumps/MumpsSolver.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/mumps/MumpsParallelSOE.o /home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/mumps/MumpsParallelSolver.o -L/home/panitha/usr/local/scalapack -lscalapack /home/panitha/PARALLEL/BLACS/LIB/blacs.a /home/panitha/PARALLEL/BLACS/LIB/blacsCinit.a /home/panitha/PARALLEL/BLACS/LIB/blacs.a /home/panitha/PARALLEL/BLACS/LIB/blacsF77init.a /home/panitha/PARALLEL/BLACS/LIB/blacs.a /home/panitha/PARALLEL/lapack/liblapack.a /home/panitha/PARALLEL/BLAS/blas.a -L/home/panitha/PARALLEL/mumps/lib -ldmumps -lmumps_common -lpord /home/panitha/usr/local/ParMetis/libparmetis.a /home/panitha/usr/local/ParMetis/libmetis.a -L/home/panitha/usr/local/scalapack -lscalapack /home/panitha/PARALLEL/BLACS/LIB/blacs.a /home/panitha/PARALLEL/BLACS/LIB/blacsCinit.a /home/panitha/PARALLEL/BLACS/LIB/blacs.a /home/panitha/PARALLEL/BLACS/LIB/blacsF77init.a /home/panitha/PARALLEL/BLACS/LIB/blacs.a /home/panitha/PARALLEL/lapack/liblapack.a /home/panitha/PARALLEL/BLAS/blas.a /usr/lib64/libgfortran.so.3 /usr/lib64/libdl.so -L/home/panitha/usr/local/mpich2-1.1/mpich2-install/lib -lmpich /usr/lib64/libgfortran.so.3 -L/usr/lib64 -L/usr/lib64 -ldl -lm /home/panitha/lib/libDistributedSuperLU.a /home/panitha/lib/libSuperLU.a /home/panitha/lib/libArpack.a /home/panitha/lib/libAMD.a /home/panitha/lib/libDistributedSuperLU.a /home/panitha/lib/libUmfpack.a /home/panitha/lib/libCSparse.a /home/panitha/PARALLEL/lapack/liblapack.a /home/panitha/PARALLEL/BLAS/blas.a /home/panitha/lib/libCBlas.a /home/panitha/lib/libDistributedSuperLU.a /usr/lib64/libtk8.5.so /usr/lib64/libtcl8.5.so -I/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN /home/panitha/lib/libDistributedSuperLU.a /home/panitha/lib/libSuperLU.a -L/home/panitha/usr/local/mpich2-1.1/mpich2-install/lib -lmpich -ldl -lieee -lm -lc -lgfortran -Wl,-rpath,/usr/lib64 -lpng -L/home/panitha/usr/local/mpich2-1.1/mpich2-install/lib -lmpich /home/panitha/lib/libSuperLU.a -L/home/panitha/OpenSees/OTHER/SuperLU_DIST_2.5/SRC -L/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN /home/panitha/lib/libDistributedSuperLU.a -o /home/panitha/bin/OpenSeesMP
/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.o: In function `SparseGenColLinSolver::setLinearSOE(SparseGenColLinSOE&)':
/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/LinearSOESolver.h:51: multiple definition of `SparseGenColLinSolver::setLinearSOE(SparseGenColLinSOE&)'
/home/panitha/lib/libOpenSees.a(SparseGenColLinSolver.o):/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/LinearSOESolver.h:51: first defined here
/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.o: In function `~SparseGenColLinSolver':
/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.cpp:46: multiple definition of `SparseGenColLinSolver::~SparseGenColLinSolver()'
/home/panitha/lib/libOpenSees.a(SparseGenColLinSolver.o):/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.cpp:46: first defined here
/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.o: In function `~SparseGenColLinSolver':
/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.cpp:46: multiple definition of `SparseGenColLinSolver::~SparseGenColLinSolver()'
/home/panitha/lib/libOpenSees.a(SparseGenColLinSolver.o):/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.cpp:46: first defined here
/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.o: In function `~SparseGenColLinSolver':
/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.cpp:46: multiple definition of `SparseGenColLinSolver::~SparseGenColLinSolver()'
/home/panitha/lib/libOpenSees.a(SparseGenColLinSolver.o):/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.cpp:46: first defined here
/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.o: In function `SparseGenColLinSolver':
/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.cpp:39: multiple definition of `SparseGenColLinSolver::SparseGenColLinSolver(int)'
/home/panitha/lib/libOpenSees.a(SparseGenColLinSolver.o):/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.cpp:39: first defined here
/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.o: In function `SparseGenColLinSolver':
/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.cpp:39: multiple definition of `SparseGenColLinSolver::SparseGenColLinSolver(int)'
/home/panitha/lib/libOpenSees.a(SparseGenColLinSolver.o):/home/panitha/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.cpp:39: first defined here
collect2: ld returned 1 exit status
make[1]: *** [tcl] Error 1
make[1]: Leaving directory `/home/panitha/OpenSees/SRC/modelbuilder/tcl'
make: *** [all] Error 2
Please give suggestions to compile it successfuly.
Thank you in advance.
Regards,
Anitha

[anitha]

Dear All,
Finally Installed OpenSeesMP and as well as OpenSeesSP in linux Machine.


Regards,
Anitha

[rafal]

Anitha,
Could you please write how you solved the issue?
Thanks!

[anitha]

Dear Rafal,
Sorry for the late reply.Small changes required in the Makefile.def file. In Makefile.def while definig the PARALLEL_LIB, just define $(MUMBS_LIB) and rest of all [#$(FE)/system_of_eqn/linearSOE/sparseGEN/DistributedSuperLU.o \
#$(FE)/system_of_eqn/linearSOE/sparseGEN/DistributedSparseGenColLinSOE.o \
#$(FE)/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSolver.o \] comment out and then do make.
Probabely your code will work.

Hope this will help you.

Regards,
Anitha