building error svn sources under Linux

[rafal]

When building from today svn (peera) sources I got the following error. I copied Makefile.def from the working Opensees environment (same computer), but older (more than 6 month) Opensees sources and then the building process finishes without error. Any idea what could be wrong?

/home/rafal/OpenSees/SRC/tcl/TclFeViewer.o:(.rodata._ZTV11TclFeViewer[_ZTV11TclFeViewer]+0x80): undefined reference to `Recorder::Print(OPS_Stream&, int)'
/home/rafal/OpenSees/SRC/tcl/TclFeViewer.o:(.rodata._ZTV11TclFeViewer[_ZTV11TclFeViewer]+0xa8): undefined reference to `non-virtual thunk to Recorder::Print(OPS_Stream&, int)'
/home/rafal/OpenSees/SRC/tcl/TclVideoPlayer.o: In function `TclVideoPlayer::TclVideoPlayer(char const*, char const*, char const*, Tcl_Interp*, char const*, double)':
TclVideoPlayer.cpp:(.text+0x4f6): undefined reference to `PlainMap::PlainMap()'
collect2: error: ld returned 1 exit status
Makefile:13: recipe for target 'tcl' failed
make[1]: *** [tcl] Error 1
make[1]: Leaving directory '/home/rafal/OpenSees/SRC/modelbuilder/tcl'
Makefile:48: recipe for target 'all' failed
make: *** [all] Error 2

[fmk]

cd to SRC and see if that builds AFTER you have first updated svn again ( I have been checking stuff in today for other unix systems that may have fixed the problem).

[rafal]

Thank you very much for fixing it, in fact svn update helped and now OpenSees builds ok!
However even though in Makefile.def I have
RELIABILITY = YES_RELIABILITY

I got this error:

OpenSees -- Open System For Earthquake Engineering Simulation
Pacific Earthquake Engineering Research Center -- 2.4.6 (rev 6022)

(c) Copyright 1999-2013 The Regents of the University of California
All Rights Reserved
(Copyright and Disclaimer @ http://www.berkeley.edu/OpenSees/copyright.html)


invalid command name "reliability"
while executing
"reliability"
(file "rel_industrialFrame.tcl" line 25)

[rafal]

I have solved the problem. The issue was that although I got libReliability.a in home/lib directory, the directory was not linked by the linker. Appending $(RELIABILITY_LIBRARY) to MACHINE_NUMERICAL_LIBS variable in Makefile.def helped. I think Makefile.def files in MAKES directory should be updated otherwise 'reliability' module is compiled but not linked into final OpenSees program.

[rafal]

I'm trying to build OpenSees from recent svn (rev. 6066) and get the following error (after cd SRC and make).

ModIMKPeakOriented02.cpp:509:16: warning: unused variable ‘a2’ [-Wunused-variable]
ModIMKPeakOriented02.cpp: In member function ‘virtual Response* ModIMKPeakOriented02::setResponse(const char**, int, OPS_Stream&)’:
ModIMKPeakOriented02.cpp29: error: ‘strcmp’ was not declared in this scope
../../../Makefile.def:228: recipe for target 'ModIMKPeakOriented02.o' failed
make[2]: *** [ModIMKPeakOriented02.o] Error 1
make[2]: Leaving directory '/home/sewi/OpenSees/SRC/material/uniaxial'
Makefile:6: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory '/home/sewi/OpenSees/SRC/material'
Makefile:12: recipe for target 'all' failed
make: *** [all] Error 2

Previous revision 6065 does not have this error.

[fmk]

in the OpenSees/SRC/OPS_Globals.h file you can uncomment the line: #include <string.h> and possibly the <stdlib.h line as well. in case you don't know how, simply remove the preceeding //

[rafal]

Dear Frank,
I modified OPS_Globals.h by uncommenting the two lines as you wrote and make in SRC/ is successful, however now issuing 'make' in the main Opensees directory fails during the linking stage. Below is the error I get. I updated to svn 6067 revision.

make[1]: Leaving directory '/home/sewi/OpenSees/OTHER/METIS'
LIBRARIES BUILT ... NOW LINKING OpenSees PROGRAM
make[1]: Entering directory '/home/sewi/OpenSees/SRC/tcl'
make[1]: Nothing to be done for 'tcl'.
make[1]: Leaving directory '/home/sewi/OpenSees/SRC/tcl'
make[1]: Entering directory '/home/sewi/OpenSees/SRC/modelbuilder/tcl'
make[2]: Entering directory '/home/sewi/OpenSees/SRC/tcl'
make[2]: Nothing to be done for 'tcl'.
make[2]: Leaving directory '/home/sewi/OpenSees/SRC/tcl'
collect2 version 5.2.1 20150808
/usr/bin/ld -plugin /usr/lib/gcc/x86_64-linux-gnu/5/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper -plugin-opt=-fresolution=/tmp/ccIvNI6E.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -export-dynamic -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /home/sewi/bin/OpenSee6066 /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/5/crtbegin.o -L/usr/local/lib -L/home/sewi/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -v /home/sewi/OpenSees/SRC/tcl/tclMain.o /home/sewi/OpenSees/SRC/tcl/tclAppIni
t.o /home/sewi/OpenSees/SRC/tcl/commands.o /home/sewi/OpenSees/SRC/modelbuilder/tcl/myCommands.o /home/sewi/OpenSees/SRC/tcl/TclFeViewer.o /home/sewi/OpenSees/SRC/tcl/TclVideoPlayer.o /home/sewi/OpenSees/SRC/domain/pattern/TclPatternCommand.o /home/sewi/OpenSees/SRC/domain/pattern/TclSeriesCommand.o /home/sewi/OpenSees/SRC/domain/pattern/TclSeriesIntegratorCommand.o /home/sewi/OpenSees/SRC/domain/groundMotion/TclGroundMotionCommand.o /home/sewi/OpenSees/SRC/material/uniaxial/limitState/TclLimitState.o /home/sewi/OpenSees/SRC/element/zeroLength/TclZeroLength.o /home/sewi/OpenSees/SRC/element/forceBeamColumn/TclForceBeamColumnCommand.o /home/sewi/OpenSees/SRC/coordTransformation/TclGeomTransfCommand.o /home/sewi/OpenSees/SRC/element/joint/TclJoint2dCommand.o /home/sewi/OpenSees/SRC/element/joint/TclJoint3dCommand.o /home/sewi/OpenSees/SRC/element/joint/TclBeamColumnJointCommand.o /home/sewi/OpenSees/SRC/element/updatedLagrangianBeamColumn/TclElement2dYS.o /home/sewi/OpenSees/SRC/element/updatedLagrangianBeamColumn/TclElement2dGNL.o /home/sewi/OpenSees/SRC/element/updatedLagrangianBeamColumn/TclCyclicModelCommands.o /home/sewi/OpenSees/SRC/material/yieldSurface/yieldSurfaceBC/TclModelBuilderYieldSurfaceBCCommand.o /home/sewi/OpenSees/SRC/material/yieldSurface/evolution/TclModelBuilderYS_EvolutionCommand.o /home/sewi/OpenSees/SRC/material/yieldSurface/plasticHardeningMaterial/TclModelBuilderYSPlasticMaterialCommand.o /home/sewi/OpenSees/SRC/damage/TclModelBuilderDamageModelCommand.o /home/sewi/OpenSees/SRC/material/uniaxial/PY/TclPyTzQzMaterialCommand.o /home/sewi/OpenSees/SRC/material/nD/soil/TclUpdateMaterialStageCommand.o /home/sewi/OpenSees/SRC/element/UP-ucsd/TclFourNodeQuadUPCommand.o /home/sewi/OpenSees/SRC/recorder/TclRecorderCommands.o /home/sewi/OpenSees/SRC/database/TclDatabaseCommands.o /home/sewi/OpenSees/SRC/element/TclElementCommands.o /home/sewi/OpenSees/SRC/element/dispBeamColumnInt/TclDispBeamColumnIntCommand.o /home/sewi/OpenSees/SRC/element/elasticBeamColumn/TclElasticBeamCommand.o /home/sewi/OpenSees/SRC/element/fourNodeQuad/TclFourNodeQuadCommand.o /home/sewi/OpenSees/SRC/element/brick/TclTwenty_Node_BrickCommand.o /home/sewi/OpenSees/SRC/element/brick/TclBrickCommand.o /home/sewi/OpenSees/SRC/element/adapter/TclActuatorCommand.o /home/sewi/OpenSees/SRC/element/adapter/TclActuatorCorotCommand.o /home/sewi/OpenSees/SRC/element/adapter/TclAdapterCommand.o /home/sewi/OpenSees/SRC/element/generic/TclGenericClientCommand.o /home/sewi/OpenSees/SRC/element/generic/TclGenericCopyCommand.o /home/sewi/OpenSees/SRC/element/elastomericBearing/TclElastomericBearingBoucWenCommand.o /home/sewi/OpenSees/SRC/element/feap/TclFeapElementCommand.o /home/sewi/OpenSees/SRC/material/nD/feap/TclFeapMaterialCommand.o /home/sewi/OpenSees/SRC/element/beamWithHinges/TclBeamWithHingesBuilder.o /home/sewi/OpenSees/SRC/element/frictionBearing/frictionModel/TclModelBuilderFrictionModelCommand.o /home/sewi/OpenSees/SRC/element/PFEMElement/TclModelBuilder_addPFEMElement.o /home/sewi/OpenSees/SRC/element/PFEMElement/TclPFEMCommands.o /home/sewi/OpenSees/SRC/material/uniaxial/backbone/TclModelBuilderBackboneCommand.o /home/sewi/OpenSees/SRC/material/uniaxial/TclModelBuilderUniaxialMaterialCommand.o /home/sewi/OpenSees/SRC/material/nD/TclModelBuilderNDMaterialCommand.o /home/sewi/OpenSees/SRC/material/section/yieldSurface/TclModelBuilderYS_SectionCommand.o /home/sewi/OpenSees/SRC/material/section/TclModelBuilderSectionCommand.o /home/sewi/OpenSees/SRC/modelbuilder/tcl/TclUniaxialMaterialTester.o /home/sewi/OpenSees/SRC/modelbuilder/tcl/TclSectionTester.o /home/sewi/OpenSees/SRC/modelbuilder/tcl/TclModelBuilder.o /home/sewi/OpenSees/SRC/domain/component/TclUpdateMaterialCommand.o /home/sewi/OpenSees/SRC/domain/component/TclParameterCommands.o /home/sewi/OpenSees/SRC/domain/region/TclRegionCommands.o /home/sewi/OpenSees/SRC/element/twoNodeLink/TclTwoNodeLinkCommand.o /home/sewi/OpenSees/SRC/element/frictionBearing/TclRJWatsonEQSCommand.o /home/sewi/OpenSees/SRC/material/uniaxial/TclReinforcingSteel.o /home/sewi/OpenSees/SRC/material/uniaxial/snap/TclSnapMaterialCommand.o /home/sewi/OpenSees/SRC/material/uniaxial/TclHyperbolicGapMaterial.o /home/sewi/OpenSees/SRC/element/frictionBearing/TclFlatSliderCommand.o /home/sewi/OpenSees/SRC/element/elastomericBearing/TclElastomericBearingPlasticityCommand.o /home/sewi/OpenSees/SRC/element/elastomericBearing/TclElastomericBearingUFRPCommand.o /home/sewi/OpenSees/SRC/element/frictionBearing/TclSingleFPCommand.o /home/sewi/OpenSees/SRC/material/uniaxial/fedeas/TclFedeasMaterialCommand.o /home/sewi/OpenSees/SRC/material/uniaxial/drain/TclDrainMaterialCommand.o /home/sewi/OpenSees/SRC/api/elementAPI_TCL.o /home/sewi/lib/libOpenSees.a /home/sewi/lib/libOptimization.a /home/sewi/lib/libReliability.a /home/sewi/lib/libArpack.a /home/sewi/lib/libSuperLU.a /home/sewi/lib/libUmfpack.a /home/sewi/lib/libCSparse.a /home/sewi/lib/libLapack.a /home/sewi/lib/libBlas.a /home/sewi/lib/libCBlas.a /home/sewi/lib/libAMD.a -ldl -lgfortran -ltcl8.5 -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/5/crtend.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o
GNU ld (GNU Binutils for Debian) 2.25.1
/home/sewi/lib/libOpenSees.a(PFEMMesher2D.o): In function `PFEMMesher2D::discretize(int, Vector const&, Vector const&, Vector const&, double, int, Vector const&, Vector const&, Vector const&, Domain*, int&)':
PFEMMesher2D.cpp:(.text+0x44a7): undefined reference to `triangulate'
/home/sewi/lib/libOpenSees.a(PFEMMesher2D.o): In function `PFEMMesher2D::doTriangulation(double, ID const&, ID const&, Domain*, ID&)':
PFEMMesher2D.cpp:(.text+0x5ead): undefined reference to `triangulate'
/home/sewi/lib/libOpenSees.a(PFEMMesher3D.o): In function `PFEMMesher3D::discretize(int, std::vector<PFEMMesher3D::Point, std::allocator<PFEMMesher3D::Point> > const&, std::vector<PFEMMesher3D::Facet, std::allocator<PFEMMesher3D::Facet> >, std::vector<PFEMMesher3D::Point, std::allocator<PFEMMesher3D::Point> > const&, double, int, std::vector<int, std::allocator<int> > const&, std::vector<double, std::allocator<double> > const&, Domain*, int&)':
PFEMMesher3D.cpp:(.text+0x17e1): undefined reference to `tetrahedralize(char*, tetgenio*, tetgenio*, tetgenio*, tetgenio*)'
/home/sewi/lib/libOpenSees.a(PFEMMesher3D.o): In function `PFEMMesher3D::doTriangulation(std::vector<int, std::allocator<int> > const&, double, double, std::vector<int, std::allocator<int> > const&, Domain*, std::vector<int, std::allocator<int> >&)':
PFEMMesher3D.cpp:(.text+0x38fc): undefined reference to `tetrahedralize(char*, tetgenio*, tetgenio*, tetgenio*, tetgenio*)'
PFEMMesher3D.cpp:(.text+0x3c15): undefined reference to `tetgenmesh::PI'
PFEMMesher3D.cpp:(.text+0x481b): undefined reference to `tetgenmesh::lu_decmp(double (*) [4], int, int*, double*, int)'
PFEMMesher3D.cpp:(.text+0x4918): undefined reference to `tetgenmesh::circumsphere(double*, double*, double*, double*, double*, double*)'
PFEMMesher3D.cpp:(.text+0x4bf7): undefined reference to `tetgenmesh::memorypool::~memorypool()'
PFEMMesher3D.cpp:(.text+0x4c17): undefined reference to `tetgenmesh::memorypool::~memorypool()'
PFEMMesher3D.cpp:(.text+0x4c33): undefined reference to `tetgenmesh::memorypool::~memorypool()'
PFEMMesher3D.cpp:(.text+0x4c4f): undefined reference to `tetgenmesh::memorypool::~memorypool()'
PFEMMesher3D.cpp:(.text+0x4c6b): undefined reference to `tetgenmesh::memorypool::~memorypool()'
/home/sewi/lib/libOpenSees.a(PFEMMesher3D.o):PFEMMesher3D.cpp:(.text+0x4c87): more undefined references to `tetgenmesh::memorypool::~memorypool()' follow
/home/sewi/lib/libOpenSees.a(PFEMMesher3D.o): In function `PFEMMesher3D::doTriangulation(std::vector<int, std::allocator<int> > const&, double, double, std::vector<int, std::allocator<int> > const&, Domain*, std::vector<int, std::allocator<int> >&)':
PFEMMesher3D.cpp:(.text+0x4d47): undefined reference to `tetgenmesh::arraypool::~arraypool()'
PFEMMesher3D.cpp:(.text+0x4d63): undefined reference to `tetgenmesh::arraypool::~arraypool()'
PFEMMesher3D.cpp:(.text+0x4d7f): undefined reference to `tetgenmesh::arraypool::~arraypool()'
PFEMMesher3D.cpp:(.text+0x4d9b): undefined reference to `tetgenmesh::arraypool::~arraypool()'
PFEMMesher3D.cpp:(.text+0x4db7): undefined reference to `tetgenmesh::arraypool::~arraypool()'
/home/sewi/lib/libOpenSees.a(PFEMMesher3D.o): In function `tetgenmesh::~tetgenmesh()':
PFEMMesher3D.cpp:(.text._ZN10tetgenmeshD2Ev[_ZN10tetgenmeshD5Ev]+0x2d): undefined reference to `tetgenmesh::memorypool::~memorypool()'
PFEMMesher3D.cpp:(.text._ZN10tetgenmeshD2Ev[_ZN10tetgenmeshD5Ev]+0x4a): undefined reference to `tetgenmesh::memorypool::~memorypool()'
PFEMMesher3D.cpp:(.text._ZN10tetgenmeshD2Ev[_ZN10tetgenmeshD5Ev]+0x63): undefined reference to `tetgenmesh::memorypool::~memorypool()'
PFEMMesher3D.cpp:(.text._ZN10tetgenmeshD2Ev[_ZN10tetgenmeshD5Ev]+0x7c): undefined reference to `tetgenmesh::memorypool::~memorypool()'
PFEMMesher3D.cpp:(.text._ZN10tetgenmeshD2Ev[_ZN10tetgenmeshD5Ev]+0x95): undefined reference to `tetgenmesh::memorypool::~memorypool()'
/home/sewi/lib/libOpenSees.a(PFEMMesher3D.o):PFEMMesher3D.cpp:(.text._ZN10tetgenmeshD2Ev[_ZN10tetgenmeshD5Ev]+0xae): more undefined references to `tetgenmesh::memorypool::~memorypool()' follow
/home/sewi/lib/libOpenSees.a(PFEMMesher3D.o): In function `tetgenmesh::~tetgenmesh()':
PFEMMesher3D.cpp:(.text._ZN10tetgenmeshD2Ev[_ZN10tetgenmeshD5Ev]+0x169): undefined reference to `tetgenmesh::arraypool::~arraypool()'
PFEMMesher3D.cpp:(.text._ZN10tetgenmeshD2Ev[_ZN10tetgenmeshD5Ev]+0x185): undefined reference to `tetgenmesh::arraypool::~arraypool()'
PFEMMesher3D.cpp:(.text._ZN10tetgenmeshD2Ev[_ZN10tetgenmeshD5Ev]+0x1a1): undefined reference to `tetgenmesh::arraypool::~arraypool()'
PFEMMesher3D.cpp:(.text._ZN10tetgenmeshD2Ev[_ZN10tetgenmeshD5Ev]+0x1bd): undefined reference to `tetgenmesh::arraypool::~arraypool()'
PFEMMesher3D.cpp:(.text._ZN10tetgenmeshD2Ev[_ZN10tetgenmeshD5Ev]+0x1d9): undefined reference to `tetgenmesh::arraypool::~arraypool()'
collect2: error: ld returned 1 exit status
Makefile:13: recipe for target 'tcl' failed
make[1]: *** [tcl] Error 1
make[1]: Leaving directory '/home/sewi/OpenSees/SRC/modelbuilder/tcl'
Makefile:48: recipe for target 'all' failed
make: *** [all] Error 2

[rafal]

The issue in my previous post is caused by adding the following line in
OpenSees/SRC/modelbuilder/tcl/Makefile

+ $(FE)/element/PFEMElement/TclPFEMCommands.o \

The change was made in the last svn peera revision 6067 by mhscott

Deleting this line make the building successful.

[mhscott]

This line should not cause problem since "TclPFEMCommands.o" was in the SRC/Makefile. We just move it to the modelbulder/tcl/Makefile. Based on the error messages, it's missing triangle and tetgen libraries in the Makefile.def.

Based on the linking errors, add the following in Makefile.def:

TRIANGLE_LIBRARY = $(libpath)/libTriangle.a
TETGEN_LIBRARY = $(libpath)/libTetgen.a

MACHINE_NUMERICAL_LIBS = ... $(TRIANGLE_LIBRARY) $(TETGEN_LIBRARY)


The following should also be added in Makefile.def:

TRIANGLEdir = $(minjie)/OTHER/Triangle
TETGENdir = $(minjie)/OTHER/tetgen1.4.3

DIRS = ... $(TRIANGLEdir) $(TETGENdir)

[rafal]

Dear Michael,
Thank you! In fact adding those lines in Makefile.def helped.
Out of curiosity is the size of OpenSees executable under Linux(Debian Unstable) of 20MB as it should be?

[hovey]

rafal and Dr. Scott, thank you for your contributions to this post, which were relevant to me here:

http://opensees.berkeley.edu/community/ ... RY#p104511

-cbh

[zanakarimi]

I followed the replies and made changes but still no luck with OpenSees compilation on my cluster machine. SEQUENTIAL version is compiled successfully but for PARALLEL I get the following error. Does anyone have any suggestion?
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/BLAS'
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/BLAS'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/CBLAS'
ar cqls /home/zaka2936/lib/libCBlas.a idamax.o dasum.o daxpy.o dcopy.o ddot.o dnrm2.o drot.o dscal.o \
dgemv.o dsymv.o dtrsv.o dger.o dsyr2.o dmyblas2.o
ranlib /home/zaka2936/lib/libCBlas.a
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/CBLAS'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/LAPACK'
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/LAPACK'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/AMD'
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/AMD'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/CSPARSE'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/CSPARSE'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/SuperLU_4.1/SRC'
Makefile:152: warning: overriding commands for target `.c.o'
../../../Makefile.def:218: warning: ignoring old commands for target `.c.o'
Makefile:155: warning: overriding commands for target `.f.o'
../../../Makefile.def:221: warning: ignoring old commands for target `.f.o'
ar cqls /home/zaka2936/lib/libSuperLU.a \
dgssv.o dgssvx.o dsp_blas2.o dsp_blas3.o dgscon.o dlangs.o dgsequ.o dlaqgs.o dpivotgrowth.o dgsrfs.o dgstrf.o dgstrs.o dcopy_to_ucol.o dsnode_dfs.o dsnode_bmod.o dpanel_dfs.o dpanel_bmod.o dreadhb.o dreadrb.o dreadtriple.o dcolumn_dfs.o dcolumn_bmod.o dpivotL.o dpruneL.o dmemory.o dutil.o dmyblas2.o dgsisx.o dgsitrf.o dldperm.o ilu_ddrop_row.o ilu_dsnode_dfs.o ilu_dcolumn_dfs.o ilu_dpanel_dfs.o ilu_dcopy_to_ucol.o ilu_dpivotL.o ddiagonal.o superlu_timer.o util.o memory.o get_perm_c.o mmd.o sp_coletree.o sp_preorder.o sp_ienv.o relax_snode.o heap_relax_snode.o colamd.o ilu_relax_snode.o ilu_heap_relax_snode.o mark_relax.o mc64ad.o qselect.o lsame.o xerbla.o dlacon.o dlamch.o
ranlib /home/zaka2936/lib/libSuperLU.a
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/SuperLU_4.1/SRC'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/ARPACK'
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/ARPACK'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/UMFPACK'
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/UMFPACK'
make[1]: Entering directory `/home/zaka2936/OpenSees/SRC'
make[2]: Entering directory `/home/zaka2936/OpenSees/SRC/matrix'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/zaka2936/OpenSees/SRC/matrix'
make[2]: Entering directory `/home/zaka2936/OpenSees/SRC/database'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/zaka2936/OpenSees/SRC/database'
make[2]: Entering directory `/home/zaka2936/OpenSees/SRC/system_of_eqn'
make[3]: Entering directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE'
make[4]: Entering directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/bandSPD'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/bandSPD'
make[4]: Entering directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/bandGEN'
Unknown target BandGenLinSOE_Single.o, try: make help
make[4]: Leaving directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/bandGEN'
make[4]: Entering directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/fullGEN'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/fullGEN'
make[4]: Entering directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/profileSPD'
Unknown target ProfileSPDLinSolverGather.o, try: make help
Unknown target ProfileSPDLinSOEGather.o, try: make help
make[4]: Leaving directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/profileSPD'
make[4]: Entering directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN'
Making DistributedSuperLU.o from DistributedSuperLU.cpp
g++ -Wall -D_LINUX -D_UNIX -D_TCL85 -D_NOGRAPHICS -O3 -ffloat-store -I/usr/includes/tcl-private/generic -I/home/zaka2936/OpenSees/SRC/matrix -I/home/zaka2936/OpenSees/SRC/nDarray -I/home/zaka2936/OpenSees/SRC/tagged -I/home/zaka2936/OpenSees/SRC/damage -I/home/zaka2936/OpenSees/SRC/tcl -I/home/zaka2936/OpenSees/SRC/material -I/home/zaka2936/OpenSees/SRC/material/wall -I/home/zaka2936/OpenSees/SRC/material/uniaxial -I/home/zaka2936/OpenSees/SRC/material/uniaxial/fedeas -I/home/zaka2936/OpenSees/SRC/material/uniaxial/drain -I/home/zaka2936/OpenSees/SRC/material/uniaxial/snap -I/home/zaka2936/OpenSees/SRC/material/uniaxial/PY -I/home/zaka2936/OpenSees/SRC/material/uniaxial/limitState -I/home/zaka2936/OpenSees/SRC/material/uniaxial/limitState/limitCurve -I/home/zaka2936/OpenSees/SRC/material/uniaxial/backbone -I/home/zaka2936/OpenSees/SRC/material/state -I/home/zaka2936/OpenSees/SRC/material/state/stiffness -I/home/zaka2936/OpenSees/SRC/material/state/unloading -I/home/zaka2936/OpenSees/SRC/material/state/strength -I/home/zaka2936/OpenSees/SRC/material/nD -I/home/zaka2936/OpenSees/SRC/material/nD/soil -I/home/zaka2936/OpenSees/SRC/material/nD/feap -I/home/zaka2936/OpenSees/SRC/material/nD/Template3Dep -I/home/zaka2936/OpenSees/SRC/material/nD/NewTemplate3Dep -I/home/zaka2936/OpenSees/SRC/material/nD/FiniteDeformation -I/home/zaka2936/OpenSees/SRC/material/nD/FiniteDeformation/fdFlow -I/home/zaka2936/OpenSees/SRC/material/nD/FiniteDeformation/fdYield -I/home/zaka2936/OpenSees/SRC/material/nD/FiniteDeformation/fdEvolution -I/home/zaka2936/OpenSees/SRC/material/nD/cyclicSoil -I/home/zaka2936/OpenSees/SRC/material/nD/UWmaterials -I/home/zaka2936/OpenSees/SRC/material/section -I/home/zaka2936/OpenSees/SRC/material/section/repres/cell -I/home/zaka2936/OpenSees/SRC/material/section/repres/patch -I/home/zaka2936/OpenSees/SRC/material/section/repres/reinfBar -I/home/zaka2936/OpenSees/SRC/material/section/repres/reinfLayer -I/home/zaka2936/OpenSees/SRC/material/section/repres/section -I/home/zaka2936/OpenSees/SRC/material/section/fiber -I/home/zaka2936/OpenSees/SRC/material/section/integration -I/home/zaka2936/OpenSees/SRC/material/section/yieldSurface -I/home/zaka2936/OpenSees/SRC/material/yieldSurface/evolution -I/home/zaka2936/OpenSees/SRC/material/yieldSurface/plasticHardeningMaterial -I/home/zaka2936/OpenSees/SRC/material/yieldSurface/yieldSurfaceBC -I/home/zaka2936/OpenSees/SRC/material/ce234 -I/home/zaka2936/OpenSees/SRC/recorder -I/home/zaka2936/OpenSees/SRC/recorder/response -I/home/zaka2936/OpenSees/SRC/handler -I/home/zaka2936/OpenSees/SRC/database -I/home/zaka2936/OpenSees/SRC/renderer -I/home/zaka2936/OpenSees/SRC/convergenceTest -I/home/zaka2936/OpenSees/SRC/utility -I/home/zaka2936/OpenSees/SRC/actor -I/home/zaka2936/OpenSees/SRC/actor/channel -I/home/zaka2936/OpenSees/SRC/actor/message -I/home/zaka2936/OpenSees/SRC/actor/machineBroker -I/home/zaka2936/OpenSees/SRC/actor/objectBroker -I/home/zaka2936/OpenSees/SRC/actor/actor -I/home/zaka2936/OpenSees/SRC/actor/shadow -I/home/zaka2936/OpenSees/SRC/actor/address -I/home/zaka2936/OpenSees/SRC/tagged/storage -I/home/zaka2936/OpenSees/SRC/domain -I/home/zaka2936/OpenSees/SRC/domain/domain -I/home/zaka2936/OpenSees/SRC/domain/domain/single -I/home/zaka2936/OpenSees/SRC/domain/component -I/home/zaka2936/OpenSees/SRC/domain/component/storage -I/home/zaka2936/OpenSees/SRC/domain/domain/partitioned -I/home/zaka2936/OpenSees/SRC/domain/partitioner -I/home/zaka2936/OpenSees/SRC/domain/loadBalancer -I/home/zaka2936/OpenSees/SRC/domain/subdomain -I/home/zaka2936/OpenSees/SRC/domain/region -I/home/zaka2936/OpenSees/SRC/domain/node -I/home/zaka2936/OpenSees/SRC/domain/load -I/home/zaka2936/OpenSees/SRC/domain/pattern -I/home/zaka2936/OpenSees/SRC/domain/pattern/drm -I/home/zaka2936/OpenSees/SRC/domain/groundMotion -I/home/zaka2936/OpenSees/SRC/domain/constraints -I/home/zaka2936/OpenSees/SRC/domain/region -I/home/zaka2936/OpenSees/SRC/element -I/home/zaka2936/OpenSees/SRC/element/beam2d -I/home/zaka2936/OpenSees/SRC/element/beam3d -I/home/zaka2936/OpenSees/SRC/element/truss -I/home/zaka2936/OpenSees/SRC/element/fortran -I/home/zaka2936/OpenSees/SRC/element/feap -I/home/zaka2936/OpenSees/SRC/element/zeroLength -I/home/zaka2936/OpenSees/SRC/element/fourNodeQuad -I/home/zaka2936/OpenSees/SRC/element/triangle -I/home/zaka2936/OpenSees/SRC/element/PFEMElement -I/home/zaka2936/OpenSees/SRC/element/beamWithHinges -I/home/zaka2936/OpenSees/SRC/element/dispBeamColumn -I/home/zaka2936/OpenSees/SRC/element/dispBeamColumnInt -I/home/zaka2936/OpenSees/SRC/element/forceBeamColumn -I/home/zaka2936/OpenSees/SRC/element/generic -I/home/zaka2936/OpenSees/SRC/element/elasticBeamColumn -I/home/zaka2936/OpenSees/SRC/element/8nbrick -I/home/zaka2936/OpenSees/SRC/element/20nbrick -I/home/zaka2936/OpenSees/SRC/element/27nbrick -I/home/zaka2936/OpenSees/SRC/element/upU -I/home/zaka2936/OpenSees/SRC/element/UP_ucdavis -I/home/zaka2936/OpenSees/SRC/element/UP-ucsd -I/home/zaka2936/OpenSees/SRC/element/TotalLagrangianFD20NodeBrick -I/home/zaka2936/OpenSees/SRC/element/brick -I/home/zaka2936/OpenSees/SRC/element/shell -I/home/zaka2936/OpenSees/SRC/element/joint -I/home/zaka2936/OpenSees/SRC/element/elastomericBearing -I/home/zaka2936/OpenSees/SRC/element/frictionBearing -I/home/zaka2936/OpenSees/SRC/element/frictionBearing/frictionModel -I/home/zaka2936/OpenSees/SRC/element/adapter -I/home/zaka2936/OpenSees/SRC/element/twoNodeLink -I/home/zaka2936/OpenSees/SRC/element/updatedLagrangianBeamColumn -I/home/zaka2936/OpenSees/SRC/element/UWelements -I/home/zaka2936/OpenSees/SRC/element/HUelements -I/home/zaka2936/OpenSees/SRC/analysis -I/home/zaka2936/OpenSees/SRC/analysis/analysis -I/home/zaka2936/OpenSees/SRC/analysis/handler -I/home/zaka2936/OpenSees/SRC/analysis/numberer -I/home/zaka2936/OpenSees/SRC/analysis/algorithm -I/home/zaka2936/OpenSees/SRC/analysis/algorithm/eigenAlgo -I/home/zaka2936/OpenSees/SRC/analysis/algorithm/equiSolnAlgo -I/home/zaka2936/OpenSees/SRC/analysis/algorithm/equiSolnAlgo/accelerator -I/home/zaka2936/OpenSees/SRC/analysis/algorithm/domainDecompAlgo -I/home/zaka2936/OpenSees/SRC/analysis/model -I/home/zaka2936/OpenSees/SRC/analysis/model/simple -I/home/zaka2936/OpenSees/SRC/analysis/method -I/home/zaka2936/OpenSees/SRC/analysis/fe_ele -I/home/zaka2936/OpenSees/SRC/analysis/fe_ele/penalty -I/home/zaka2936/OpenSees/SRC/analysis/fe_ele/lagrange -I/home/zaka2936/OpenSees/SRC/analysis/fe_ele/transformation -I/home/zaka2936/OpenSees/SRC/analysis/dof_grp -I/home/zaka2936/OpenSees/SRC/analysis/integrator -I/home/zaka2936/OpenSees/SRC/modelbuilder -I/home/zaka2936/OpenSees/SRC/modelbuilder/triangle -I/home/zaka2936/OpenSees/SRC/modelbuilder/tcl -I/home/zaka2936/OpenSees/SRC/system_of_eqn -I/home/zaka2936/OpenSees/SRC/system_of_eqn/eigenSOE -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/slowMatrix -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/bandSPD -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/profileSPD -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/fullGEN -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/bandGEN -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseSYM -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/petsc -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/umfGEN -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/cg -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/BJsolvers -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/itpack -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/mumps -I/home/zaka2936/OpenSees/SRC/system_of_eqn/eigenSOE -I/home/zaka2936/OpenSees/SRC/graph/graph -I/home/zaka2936/OpenSees/SRC/graph/numberer -I/home/zaka2936/OpenSees/SRC/graph/partitioner -I/home/zaka2936/OpenSees/SRC/element/nonlinearBeamColumn/element -I/home/zaka2936/OpenSees/SRC/element/nonlinearBeamColumn/fiber -I/home/zaka2936/OpenSees/SRC/element/nonlinearBeamColumn/matrixutil -I/home/zaka2936/OpenSees/SRC/element/nonlinearBeamColumn/quadrule -I/home/zaka2936/OpenSees/SRC/coordTransformation -I/home/zaka2936/OpenSees/SRC/reliability/analysis -I/home/zaka2936/OpenSees/SRC/reliability/analysis/analysis -I/home/zaka2936/OpenSees/SRC/reliability/analysis/analysis/system -I/home/zaka2936/OpenSees/SRC/reliability/analysis/convergenceCheck -I/home/zaka2936/OpenSees/SRC/reliability/analysis/curvature -I/home/zaka2936/OpenSees/SRC/reliability/analysis/designPoint -I/home/zaka2936/OpenSees/SRC/reliability/analysis/direction -I/home/zaka2936/OpenSees/SRC/reliability/analysis/gFunction -I/home/zaka2936/OpenSees/SRC/reliability/analysis/gradient -I/home/zaka2936/OpenSees/SRC/reliability/analysis/hessian -I/home/zaka2936/OpenSees/SRC/reliability/analysis/meritFunction -I/home/zaka2936/OpenSees/SRC/reliability/analysis/misc -I/home/zaka2936/OpenSees/SRC/reliability/analysis/randomNumber -I/home/zaka2936/OpenSees/SRC/reliability/analysis/rootFinding -I/home/zaka2936/OpenSees/SRC/reliability/analysis/sensitivity -I/home/zaka2936/OpenSees/SRC/reliability/analysis/stepSize -I/home/zaka2936/OpenSees/SRC/reliability/analysis/transformation -I/home/zaka2936/OpenSees/SRC/reliability/analysis/telm -I/home/zaka2936/OpenSees/SRC/reliability/domain -I/home/zaka2936/OpenSees/SRC/reliability/domain/components -I/home/zaka2936/OpenSees/SRC/reliability/domain/distributions -I/home/zaka2936/OpenSees/SRC/reliability/domain/filter -I/home/zaka2936/OpenSees/SRC/reliability/domain/modulatingFunction -I/home/zaka2936/OpenSees/SRC/reliability/domain/spectrum -I/home/zaka2936/OpenSees/SRC/reliability/domain/storage -I/home/zaka2936/OpenSees/SRC/reliability/domain/functionEvaluator -I/home/zaka2936/OpenSees/SRC/reliability/domain/performanceFunction -I/home/zaka2936/OpenSees/SRC/optimization/tcl -I/home/zaka2936/OpenSees/SRC/optimization/domain -I/home/zaka2936/OpenSees/SRC/optimization/domain/component -I/home/zaka2936/OpenSees/SRC/optimization/SNOPT -I/home/zaka2936/OpenSees/SRC/reliability/FEsensitivity -I/home/zaka2936/OpenSees/SRC/reliability/tcl -I/home/zaka2936/OpenSees/SRC/unittest -I/home/zaka2936/OpenSees/SRC/api -I/home/zaka2936/OpenSees/SRC -I/home/zaka2936/OpenSees/OTHER/SuperLU_4.1/SRC -I/home/zaka2936/OpenSees/SRC/package -I/home/zaka2936/OpenSees/SRC/../OTHER/AMD -I/home/zaka2936/OpenSees/SRC/../OTHER/CSPARSE -I/home/zaka2936/OpenSees/SRC/../OTHER/Triangle -I/home/zaka2936/OpenSees/SRC/../OTHER/tetgen1.4.3 -I/usr/include -I/include -I/usr/include/cxx -I/home/zaka2936/include -I/home/zaka2936/blitz -c DistributedSuperLU.cpp -o DistributedSuperLU.o
DistributedSuperLU.cpp:40:27: fatal error: superlu_ddefs.h: No such file or directory
#include <superlu_ddefs.h>
^
compilation terminated.
make[4]: *** [DistributedSuperLU.o] Error 1
make[4]: Leaving directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN'
make[3]: *** [all] Error 2
make[3]: Leaving directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/home/zaka2936/OpenSees/SRC/system_of_eqn'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/zaka2936/OpenSees/SRC'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/METIS'
Makefile:5: warning: overriding commands for target `.c.o'
../../Makefile.def:218: warning: ignoring old commands for target `.c.o'
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/METIS'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/Triangle'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/Triangle'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/tetgen1.4.3'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/tetgen1.4.3'
LIBRARIES BUILT ... NOW LINKING OpenSees PROGRAM
make[1]: Entering directory `/home/zaka2936/OpenSees/SRC/tcl'
make[1]: Nothing to be done for `tcl'.
make[1]: Leaving directory `/home/zaka2936/OpenSees/SRC/tcl'
make[1]: Entering directory `/home/zaka2936/OpenSees/SRC/modelbuilder/tcl'
Makefile:30: warning: overriding commands for target `tcl'
Makefile:13: warning: ignoring old commands for target `tcl'
make[2]: Entering directory `/home/zaka2936/OpenSees/SRC/tcl'
make[2]: Nothing to be done for `tcl'.
make[2]: Leaving directory `/home/zaka2936/OpenSees/SRC/tcl'
echo g++ -rdynamic /home/zaka2936/OpenSees/SRC/tcl/tclMain.o /home/zaka2936/OpenSees/SRC/tcl/mpiMain.o /home/zaka2936/OpenSees/SRC/tcl/commands.o /home/zaka2936/OpenSees/SRC/modelbuilder/tcl/myCommands.o /home/zaka2936/OpenSees/SRC/actor/channel/MPI_Channel.o /home/zaka2936/OpenSees/SRC/actor/machineBroker/MPI_MachineBroker.o /home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSOE.o /home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSolver.o /home/zaka2936/OpenSees/SRC/domain/subdomain/ActorSubdomain.o /home/zaka2936/OpenSees/SRC/domain/subdomain/ShadowSubdomain.o /home/zaka2936/OpenSees/SRC/tcl/TclFeViewer.o /home/zaka2936/OpenSees/SRC/tcl/TclVideoPlayer.o \
/home/zaka2936/lib/libOpenSees.a -L/lib -L/home/zaka2936/lib \
-lm /home/zaka2936/lib/libArpack.a /home/zaka2936/lib/libSuperLU.a /home/zaka2936/lib/libUmfpack.a /home/zaka2936/lib/libLapack.a /home/zaka2936/lib/libBlas.a /home/zaka2936/lib/libCBlas.a /home/zaka2936/lib/libCBlas.a /home/zaka2936/lib/libAMD.a /home/zaka2936/lib/libTriangle.a /home/zaka2936/lib/libTetgen.a -ldl -lgfortran /curc/tools/x_86_64/rh6/tcl/8.5.13/lib/libtcl8.5.so \
-o /home/zaka2936/bin/OpenSees
g++ -rdynamic /home/zaka2936/OpenSees/SRC/tcl/tclMain.o /home/zaka2936/OpenSees/SRC/tcl/mpiMain.o /home/zaka2936/OpenSees/SRC/tcl/commands.o /home/zaka2936/OpenSees/SRC/modelbuilder/tcl/myCommands.o /home/zaka2936/OpenSees/SRC/actor/channel/MPI_Channel.o /home/zaka2936/OpenSees/SRC/actor/machineBroker/MPI_MachineBroker.o /home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSOE.o /home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSolver.o /home/zaka2936/OpenSees/SRC/domain/subdomain/ActorSubdomain.o /home/zaka2936/OpenSees/SRC/domain/subdomain/ShadowSubdomain.o /home/zaka2936/OpenSees/SRC/tcl/TclFeViewer.o /home/zaka2936/OpenSees/SRC/tcl/TclVideoPlayer.o /home/zaka2936/lib/libOpenSees.a -L/lib -L/home/zaka2936/lib -lm /home/zaka2936/lib/libArpack.a /home/zaka2936/lib/libSuperLU.a /home/zaka2936/lib/libUmfpack.a /home/zaka2936/lib/libLapack.a /home/zaka2936/lib/libBlas.a /home/zaka2936/lib/libCBlas.a /home/zaka2936/lib/libCBlas.a /home/zaka2936/lib/libAMD.a /home/zaka2936/lib/libTriangle.a /home/zaka2936/lib/libTetgen.a -ldl -lgfortran /curc/tools/x_86_64/rh6/tcl/8.5.13/lib/libtcl8.5.so -o /home/zaka2936/bin/OpenSees
g++: error: /home/zaka2936/OpenSees/SRC/actor/channel/MPI_Channel.o: No such file or directory
g++: error: /home/zaka2936/OpenSees/SRC/actor/machineBroker/MPI_MachineBroker.o: No such file or directory
g++: error: /home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSOE.o: No such file or directory
g++: error: /home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSolver.o: No such file or directory
g++: error: /home/zaka2936/lib/libOpenSees.a: No such file or directory
make[1]: *** [tcl] Error 1
make[1]: Leaving directory `/home/zaka2936/OpenSees/SRC/modelbuilder/tcl'
make: *** [all] Error 2
[zaka2936@login03 OpenSees]$

[fmk]

cd to the directories containing the missing files and see if issuing a make in those directories will create the files

[zanakarimi]

fmk wrote:
> cd to the directories containing the missing files and see if issuing a
> make in those directories will create the files

Thanks for the prompt response Frank,
I copied some *.h missing files from SuperLU_DIST_2.5 into SuperLU_4.1 folder (assuming they are the same), then I get the following error:
btw, I also tried other SuperLU versions or commenting missing *.h file ( #include <superlu_ddefs.h> ) but still no luck. I've tried out revision 6016 and 6065.

Making DistributedSuperLU.o from DistributedSuperLU.cpp
g++ -Wall -D_LINUX -D_UNIX -D_TCL85 -D_NOGRAPHICS -O3 -ffloat-store -I/usr/includes/tcl-private/generic -I/home/zaka2936/OpenSees/SRC/matrix -I/home/zaka2936/OpenSees/SRC/nDarray -I/home/zaka2936/OpenSees/SRC/tagged -I/home/zaka2936/OpenSees/SRC/damage -I/home/zaka2936/OpenSees/SRC/tcl -I/home/zaka2936/OpenSees/SRC/material -I/home/zaka2936/OpenSees/SRC/material/wall -I/home/zaka2936/OpenSees/SRC/material/uniaxial -I/home/zaka2936/OpenSees/SRC/material/uniaxial/fedeas -I/home/zaka2936/OpenSees/SRC/material/uniaxial/drain -I/home/zaka2936/OpenSees/SRC/material/uniaxial/snap -I/home/zaka2936/OpenSees/SRC/material/uniaxial/PY -I/home/zaka2936/OpenSees/SRC/material/uniaxial/limitState -I/home/zaka2936/OpenSees/SRC/material/uniaxial/limitState/limitCurve -I/home/zaka2936/OpenSees/SRC/material/uniaxial/backbone -I/home/zaka2936/OpenSees/SRC/material/state -I/home/zaka2936/OpenSees/SRC/material/state/stiffness -I/home/zaka2936/OpenSees/SRC/material/state/unloading -I/home/zaka2936/OpenSees/SRC/material/state/strength -I/home/zaka2936/OpenSees/SRC/material/nD -I/home/zaka2936/OpenSees/SRC/material/nD/soil -I/home/zaka2936/OpenSees/SRC/material/nD/feap -I/home/zaka2936/OpenSees/SRC/material/nD/Template3Dep -I/home/zaka2936/OpenSees/SRC/material/nD/NewTemplate3Dep -I/home/zaka2936/OpenSees/SRC/material/nD/FiniteDeformation -I/home/zaka2936/OpenSees/SRC/material/nD/FiniteDeformation/fdFlow -I/home/zaka2936/OpenSees/SRC/material/nD/FiniteDeformation/fdYield -I/home/zaka2936/OpenSees/SRC/material/nD/FiniteDeformation/fdEvolution -I/home/zaka2936/OpenSees/SRC/material/nD/cyclicSoil -I/home/zaka2936/OpenSees/SRC/material/nD/UWmaterials -I/home/zaka2936/OpenSees/SRC/material/section -I/home/zaka2936/OpenSees/SRC/material/section/repres/cell -I/home/zaka2936/OpenSees/SRC/material/section/repres/patch -I/home/zaka2936/OpenSees/SRC/material/section/repres/reinfBar -I/home/zaka2936/OpenSees/SRC/material/section/repres/reinfLayer -I/home/zaka2936/OpenSees/SRC/material/section/repres/section -I/home/zaka2936/OpenSees/SRC/material/section/fiber -I/home/zaka2936/OpenSees/SRC/material/section/integration -I/home/zaka2936/OpenSees/SRC/material/section/yieldSurface -I/home/zaka2936/OpenSees/SRC/material/yieldSurface/evolution -I/home/zaka2936/OpenSees/SRC/material/yieldSurface/plasticHardeningMaterial -I/home/zaka2936/OpenSees/SRC/material/yieldSurface/yieldSurfaceBC -I/home/zaka2936/OpenSees/SRC/material/ce234 -I/home/zaka2936/OpenSees/SRC/recorder -I/home/zaka2936/OpenSees/SRC/recorder/response -I/home/zaka2936/OpenSees/SRC/handler -I/home/zaka2936/OpenSees/SRC/database -I/home/zaka2936/OpenSees/SRC/renderer -I/home/zaka2936/OpenSees/SRC/convergenceTest -I/home/zaka2936/OpenSees/SRC/utility -I/home/zaka2936/OpenSees/SRC/actor -I/home/zaka2936/OpenSees/SRC/actor/channel -I/home/zaka2936/OpenSees/SRC/actor/message -I/home/zaka2936/OpenSees/SRC/actor/machineBroker -I/home/zaka2936/OpenSees/SRC/actor/objectBroker -I/home/zaka2936/OpenSees/SRC/actor/actor -I/home/zaka2936/OpenSees/SRC/actor/shadow -I/home/zaka2936/OpenSees/SRC/actor/address -I/home/zaka2936/OpenSees/SRC/tagged/storage -I/home/zaka2936/OpenSees/SRC/domain -I/home/zaka2936/OpenSees/SRC/domain/domain -I/home/zaka2936/OpenSees/SRC/domain/domain/single -I/home/zaka2936/OpenSees/SRC/domain/component -I/home/zaka2936/OpenSees/SRC/domain/component/storage -I/home/zaka2936/OpenSees/SRC/domain/domain/partitioned -I/home/zaka2936/OpenSees/SRC/domain/partitioner -I/home/zaka2936/OpenSees/SRC/domain/loadBalancer -I/home/zaka2936/OpenSees/SRC/domain/subdomain -I/home/zaka2936/OpenSees/SRC/domain/region -I/home/zaka2936/OpenSees/SRC/domain/node -I/home/zaka2936/OpenSees/SRC/domain/load -I/home/zaka2936/OpenSees/SRC/domain/pattern -I/home/zaka2936/OpenSees/SRC/domain/pattern/drm -I/home/zaka2936/OpenSees/SRC/domain/groundMotion -I/home/zaka2936/OpenSees/SRC/domain/constraints -I/home/zaka2936/OpenSees/SRC/domain/region -I/home/zaka2936/OpenSees/SRC/element -I/home/zaka2936/OpenSees/SRC/element/beam2d -I/home/zaka2936/OpenSees/SRC/element/beam3d -I/home/zaka2936/OpenSees/SRC/element/truss -I/home/zaka2936/OpenSees/SRC/element/fortran -I/home/zaka2936/OpenSees/SRC/element/feap -I/home/zaka2936/OpenSees/SRC/element/zeroLength -I/home/zaka2936/OpenSees/SRC/element/fourNodeQuad -I/home/zaka2936/OpenSees/SRC/element/triangle -I/home/zaka2936/OpenSees/SRC/element/PFEMElement -I/home/zaka2936/OpenSees/SRC/element/beamWithHinges -I/home/zaka2936/OpenSees/SRC/element/dispBeamColumn -I/home/zaka2936/OpenSees/SRC/element/dispBeamColumnInt -I/home/zaka2936/OpenSees/SRC/element/forceBeamColumn -I/home/zaka2936/OpenSees/SRC/element/generic -I/home/zaka2936/OpenSees/SRC/element/elasticBeamColumn -I/home/zaka2936/OpenSees/SRC/element/8nbrick -I/home/zaka2936/OpenSees/SRC/element/20nbrick -I/home/zaka2936/OpenSees/SRC/element/27nbrick -I/home/zaka2936/OpenSees/SRC/element/upU -I/home/zaka2936/OpenSees/SRC/element/UP_ucdavis -I/home/zaka2936/OpenSees/SRC/element/UP-ucsd -I/home/zaka2936/OpenSees/SRC/element/TotalLagrangianFD20NodeBrick -I/home/zaka2936/OpenSees/SRC/element/brick -I/home/zaka2936/OpenSees/SRC/element/shell -I/home/zaka2936/OpenSees/SRC/element/joint -I/home/zaka2936/OpenSees/SRC/element/elastomericBearing -I/home/zaka2936/OpenSees/SRC/element/frictionBearing -I/home/zaka2936/OpenSees/SRC/element/frictionBearing/frictionModel -I/home/zaka2936/OpenSees/SRC/element/adapter -I/home/zaka2936/OpenSees/SRC/element/twoNodeLink -I/home/zaka2936/OpenSees/SRC/element/updatedLagrangianBeamColumn -I/home/zaka2936/OpenSees/SRC/element/UWelements -I/home/zaka2936/OpenSees/SRC/element/HUelements -I/home/zaka2936/OpenSees/SRC/analysis -I/home/zaka2936/OpenSees/SRC/analysis/analysis -I/home/zaka2936/OpenSees/SRC/analysis/handler -I/home/zaka2936/OpenSees/SRC/analysis/numberer -I/home/zaka2936/OpenSees/SRC/analysis/algorithm -I/home/zaka2936/OpenSees/SRC/analysis/algorithm/eigenAlgo -I/home/zaka2936/OpenSees/SRC/analysis/algorithm/equiSolnAlgo -I/home/zaka2936/OpenSees/SRC/analysis/algorithm/equiSolnAlgo/accelerator -I/home/zaka2936/OpenSees/SRC/analysis/algorithm/domainDecompAlgo -I/home/zaka2936/OpenSees/SRC/analysis/model -I/home/zaka2936/OpenSees/SRC/analysis/model/simple -I/home/zaka2936/OpenSees/SRC/analysis/method -I/home/zaka2936/OpenSees/SRC/analysis/fe_ele -I/home/zaka2936/OpenSees/SRC/analysis/fe_ele/penalty -I/home/zaka2936/OpenSees/SRC/analysis/fe_ele/lagrange -I/home/zaka2936/OpenSees/SRC/analysis/fe_ele/transformation -I/home/zaka2936/OpenSees/SRC/analysis/dof_grp -I/home/zaka2936/OpenSees/SRC/analysis/integrator -I/home/zaka2936/OpenSees/SRC/modelbuilder -I/home/zaka2936/OpenSees/SRC/modelbuilder/triangle -I/home/zaka2936/OpenSees/SRC/modelbuilder/tcl -I/home/zaka2936/OpenSees/SRC/system_of_eqn -I/home/zaka2936/OpenSees/SRC/system_of_eqn/eigenSOE -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/slowMatrix -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/bandSPD -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/profileSPD -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/fullGEN -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/bandGEN -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseSYM -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/petsc -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/umfGEN -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/cg -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/BJsolvers -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/itpack -I/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/mumps -I/home/zaka2936/OpenSees/SRC/system_of_eqn/eigenSOE -I/home/zaka2936/OpenSees/SRC/graph/graph -I/home/zaka2936/OpenSees/SRC/graph/numberer -I/home/zaka2936/OpenSees/SRC/graph/partitioner -I/home/zaka2936/OpenSees/SRC/element/nonlinearBeamColumn/element -I/home/zaka2936/OpenSees/SRC/element/nonlinearBeamColumn/fiber -I/home/zaka2936/OpenSees/SRC/element/nonlinearBeamColumn/matrixutil -I/home/zaka2936/OpenSees/SRC/element/nonlinearBeamColumn/quadrule -I/home/zaka2936/OpenSees/SRC/coordTransformation -I/home/zaka2936/OpenSees/SRC/reliability/analysis -I/home/zaka2936/OpenSees/SRC/reliability/analysis/analysis -I/home/zaka2936/OpenSees/SRC/reliability/analysis/analysis/system -I/home/zaka2936/OpenSees/SRC/reliability/analysis/convergenceCheck -I/home/zaka2936/OpenSees/SRC/reliability/analysis/curvature -I/home/zaka2936/OpenSees/SRC/reliability/analysis/designPoint -I/home/zaka2936/OpenSees/SRC/reliability/analysis/direction -I/home/zaka2936/OpenSees/SRC/reliability/analysis/gFunction -I/home/zaka2936/OpenSees/SRC/reliability/analysis/gradient -I/home/zaka2936/OpenSees/SRC/reliability/analysis/hessian -I/home/zaka2936/OpenSees/SRC/reliability/analysis/meritFunction -I/home/zaka2936/OpenSees/SRC/reliability/analysis/misc -I/home/zaka2936/OpenSees/SRC/reliability/analysis/randomNumber -I/home/zaka2936/OpenSees/SRC/reliability/analysis/rootFinding -I/home/zaka2936/OpenSees/SRC/reliability/analysis/sensitivity -I/home/zaka2936/OpenSees/SRC/reliability/analysis/stepSize -I/home/zaka2936/OpenSees/SRC/reliability/analysis/transformation -I/home/zaka2936/OpenSees/SRC/reliability/analysis/telm -I/home/zaka2936/OpenSees/SRC/reliability/domain -I/home/zaka2936/OpenSees/SRC/reliability/domain/components -I/home/zaka2936/OpenSees/SRC/reliability/domain/distributions -I/home/zaka2936/OpenSees/SRC/reliability/domain/filter -I/home/zaka2936/OpenSees/SRC/reliability/domain/modulatingFunction -I/home/zaka2936/OpenSees/SRC/reliability/domain/spectrum -I/home/zaka2936/OpenSees/SRC/reliability/domain/storage -I/home/zaka2936/OpenSees/SRC/reliability/domain/functionEvaluator -I/home/zaka2936/OpenSees/SRC/reliability/domain/performanceFunction -I/home/zaka2936/OpenSees/SRC/optimization/tcl -I/home/zaka2936/OpenSees/SRC/optimization/domain -I/home/zaka2936/OpenSees/SRC/optimization/domain/component -I/home/zaka2936/OpenSees/SRC/optimization/SNOPT -I/home/zaka2936/OpenSees/SRC/reliability/FEsensitivity -I/home/zaka2936/OpenSees/SRC/reliability/tcl -I/home/zaka2936/OpenSees/SRC/unittest -I/home/zaka2936/OpenSees/SRC/api -I/home/zaka2936/OpenSees/SRC -I/home/zaka2936/OpenSees/OTHER/SuperLU_4.1/SRC -I/home/zaka2936/OpenSees/SRC/package -I/home/zaka2936/OpenSees/SRC/../OTHER/AMD -I/home/zaka2936/OpenSees/SRC/../OTHER/CSPARSE -I/home/zaka2936/OpenSees/SRC/../OTHER/Triangle -I/home/zaka2936/OpenSees/SRC/../OTHER/tetgen1.4.3 -I/usr/include -I/include -I/usr/include/cxx -I/home/zaka2936/include -I/home/zaka2936/blitz -c DistributedSuperLU.cpp -o DistributedSuperLU.o
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h: In member function ‘virtual int DistributedSuperLU::solve()’:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:91:9: error: ‘int SparseGenColLinSOE::size’ is protected
int size; // order of A
^
DistributedSuperLU.cpp:95:15: error: within this context
if (theSOE->size == 0)
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:96:13: error: ‘Vector* SparseGenColLinSOE::vectB’ is protected
Vector *vectB;
^
DistributedSuperLU.cpp:101:44: error: within this context
theChannel->recvVector(0, 0, (*theSOE->vectB));
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:93:13: error: ‘double* SparseGenColLinSOE::A’ is protected
double *A, *B, *X; // 1d arrays containing coefficients of A, B and X
^
DistributedSuperLU.cpp:102:26: error: within this context
Vector vectA(theSOE->A, theSOE->nnz);
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:92:9: error: ‘int SparseGenColLinSOE::nnz’ is protected
int nnz; // number of non-zeros in A
^
DistributedSuperLU.cpp:102:37: error: within this context
Vector vectA(theSOE->A, theSOE->nnz);
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:93:13: error: ‘double* SparseGenColLinSOE::A’ is protected
double *A, *B, *X; // 1d arrays containing coefficients of A, B and X
^
DistributedSuperLU.cpp:111:26: error: within this context
Vector vectA(theSOE->A, theSOE->nnz);
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:92:9: error: ‘int SparseGenColLinSOE::nnz’ is protected
int nnz; // number of non-zeros in A
^
DistributedSuperLU.cpp:111:37: error: within this context
Vector vectA(theSOE->A, theSOE->nnz);
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:96:13: error: ‘Vector* SparseGenColLinSOE::vectB’ is protected
Vector *vectB;
^
DistributedSuperLU.cpp:116:46: error: within this context
theChannel->sendVector(0, 0, *(theSOE->vectB));
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:91:9: error: ‘int SparseGenColLinSOE::size’ is protected
int size; // order of A
^
DistributedSuperLU.cpp:126:21: error: within this context
int n = theSOE->size;
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:92:9: error: ‘int SparseGenColLinSOE::nnz’ is protected
int nnz; // number of non-zeros in A
^
DistributedSuperLU.cpp:127:23: error: within this context
int nnz = theSOE->nnz;
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:93:21: error: ‘double* SparseGenColLinSOE::X’ is protected
double *A, *B, *X; // 1d arrays containing coefficients of A, B and X
^
DistributedSuperLU.cpp:133:28: error: within this context
double *Xptr = theSOE->X;
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:93:17: error: ‘double* SparseGenColLinSOE::B’ is protected
double *A, *B, *X; // 1d arrays containing coefficients of A, B and X
^
DistributedSuperLU.cpp:134:28: error: within this context
double *Bptr = theSOE->B;
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:93:21: error: ‘double* SparseGenColLinSOE::X’ is protected
double *A, *B, *X; // 1d arrays containing coefficients of A, B and X
^
DistributedSuperLU.cpp:138:20: error: within this context
Xptr = theSOE->X;
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:98:10: error: ‘bool SparseGenColLinSOE::factored’ is protected
bool factored;
^
DistributedSuperLU.cpp:146:48: error: within this context
if ((options.Fact == FACTORED) && (theSOE->factored == false)) {
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:94:10: error: ‘int* SparseGenColLinSOE::rowA’ is protected
int *rowA, *colStartA; // int arrays containing info about coeficientss in A
^
DistributedSuperLU.cpp:148:51: error: within this context
for (int i=0; i<nnz; i++) rowA[i] = theSOE->rowA[i];
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:98:10: error: ‘bool SparseGenColLinSOE::factored’ is protected
bool factored;
^
DistributedSuperLU.cpp:158:17: error: within this context
if (theSOE->factored == false) {
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:98:10: error: ‘bool SparseGenColLinSOE::factored’ is protected
bool factored;
^
DistributedSuperLU.cpp:160:15: error: within this context
theSOE->factored = true;
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h: In member function ‘virtual int DistributedSuperLU::setSize()’:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:91:9: error: ‘int SparseGenColLinSOE::size’ is protected
int size; // order of A
^
DistributedSuperLU.cpp:187:19: error: within this context
int n = theSOE->size;
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:91:9: error: ‘int SparseGenColLinSOE::size’ is protected
int size; // order of A
^
DistributedSuperLU.cpp:207:24: error: within this context
Destroy_LU(theSOE->size, &grid, &LUstruct);
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:92:9: error: ‘int SparseGenColLinSOE::nnz’ is protected
int nnz; // number of non-zeros in A
^
DistributedSuperLU.cpp:224:23: error: within this context
int nnz = theSOE->nnz;
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:94:10: error: ‘int* SparseGenColLinSOE::rowA’ is protected
int *rowA, *colStartA; // int arrays containing info about coeficientss in A
^
DistributedSuperLU.cpp:226:49: error: within this context
for (int i=0; i<nnz; i++) rowA[i] = theSOE->rowA[i];
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:93:13: error: ‘double* SparseGenColLinSOE::A’ is protected
double *A, *B, *X; // 1d arrays containing coefficients of A, B and X
^
DistributedSuperLU.cpp:228:56: error: within this context
dCreate_CompCol_Matrix_dist(&A, n, n, nnz, theSOE->A,
^
In file included from DistributedSuperLU.cpp:33:0:
/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN/SparseGenColLinSOE.h:94:17: error: ‘int* SparseGenColLinSOE::colStartA’ is protected
int *rowA, *colStartA; // int arrays containing info about coeficientss in A
^
DistributedSuperLU.cpp:229:19: error: within this context
rowA, theSOE->colStartA,
^
make[4]: *** [DistributedSuperLU.o] Error 1
make[4]: Leaving directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/sparseGEN'
make[3]: *** [all] Error 2
make[3]: Leaving directory `/home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/home/zaka2936/OpenSees/SRC/system_of_eqn'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/zaka2936/OpenSees/SRC'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/METIS'
Makefile:5: warning: overriding commands for target `.c.o'
../../Makefile.def:226: warning: ignoring old commands for target `.c.o'
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/METIS'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/Triangle'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/Triangle'
make[1]: Entering directory `/home/zaka2936/OpenSees/OTHER/tetgen1.4.3'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/zaka2936/OpenSees/OTHER/tetgen1.4.3'
LIBRARIES BUILT ... NOW LINKING OpenSees PROGRAM
make[1]: Entering directory `/home/zaka2936/OpenSees/SRC/tcl'
make[1]: Nothing to be done for `tcl'.
make[1]: Leaving directory `/home/zaka2936/OpenSees/SRC/tcl'
make[1]: Entering directory `/home/zaka2936/OpenSees/SRC/modelbuilder/tcl'
Makefile:30: warning: overriding commands for target `tcl'
Makefile:13: warning: ignoring old commands for target `tcl'
make[2]: Entering directory `/home/zaka2936/OpenSees/SRC/tcl'
make[2]: Nothing to be done for `tcl'.
make[2]: Leaving directory `/home/zaka2936/OpenSees/SRC/tcl'
echo g++ -rdynamic /home/zaka2936/OpenSees/SRC/tcl/tclMain.o /home/zaka2936/OpenSees/SRC/tcl/mpiMain.o /home/zaka2936/OpenSees/SRC/tcl/commands.o /home/zaka2936/OpenSees/SRC/modelbuilder/tcl/myCommands.o /home/zaka2936/OpenSees/SRC/actor/channel/MPI_Channel.o /home/zaka2936/OpenSees/SRC/actor/machineBroker/MPI_MachineBroker.o /home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSOE.o /home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSolver.o /home/zaka2936/OpenSees/SRC/domain/subdomain/ActorSubdomain.o /home/zaka2936/OpenSees/SRC/domain/subdomain/ShadowSubdomain.o /home/zaka2936/OpenSees/SRC/tcl/TclFeViewer.o /home/zaka2936/OpenSees/SRC/tcl/TclVideoPlayer.o \
/home/zaka2936/lib/libOpenSees.a -L/lib -L/home/zaka2936/lib \
-lm /home/zaka2936/lib/libArpack.a /home/zaka2936/lib/libSuperLU.a /home/zaka2936/lib/libUmfpack.a /home/zaka2936/lib/libLapack.a /home/zaka2936/lib/libBlas.a /home/zaka2936/lib/libCBlas.a /home/zaka2936/lib/libCBlas.a /home/zaka2936/lib/libAMD.a /home/zaka2936/lib/libTriangle.a /home/zaka2936/lib/libTetgen.a -ldl -lgfortran /curc/tools/x_86_64/rh6/tcl/8.5.13/lib/libtcl8.5.so \
-o /home/zaka2936/bin/OpenSees
g++ -rdynamic /home/zaka2936/OpenSees/SRC/tcl/tclMain.o /home/zaka2936/OpenSees/SRC/tcl/mpiMain.o /home/zaka2936/OpenSees/SRC/tcl/commands.o /home/zaka2936/OpenSees/SRC/modelbuilder/tcl/myCommands.o /home/zaka2936/OpenSees/SRC/actor/channel/MPI_Channel.o /home/zaka2936/OpenSees/SRC/actor/machineBroker/MPI_MachineBroker.o /home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSOE.o /home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSolver.o /home/zaka2936/OpenSees/SRC/domain/subdomain/ActorSubdomain.o /home/zaka2936/OpenSees/SRC/domain/subdomain/ShadowSubdomain.o /home/zaka2936/OpenSees/SRC/tcl/TclFeViewer.o /home/zaka2936/OpenSees/SRC/tcl/TclVideoPlayer.o /home/zaka2936/lib/libOpenSees.a -L/lib -L/home/zaka2936/lib -lm /home/zaka2936/lib/libArpack.a /home/zaka2936/lib/libSuperLU.a /home/zaka2936/lib/libUmfpack.a /home/zaka2936/lib/libLapack.a /home/zaka2936/lib/libBlas.a /home/zaka2936/lib/libCBlas.a /home/zaka2936/lib/libCBlas.a /home/zaka2936/lib/libAMD.a /home/zaka2936/lib/libTriangle.a /home/zaka2936/lib/libTetgen.a -ldl -lgfortran /curc/tools/x_86_64/rh6/tcl/8.5.13/lib/libtcl8.5.so -o /home/zaka2936/bin/OpenSees
g++: error: /home/zaka2936/OpenSees/SRC/actor/channel/MPI_Channel.o: No such file or directory
g++: error: /home/zaka2936/OpenSees/SRC/actor/machineBroker/MPI_MachineBroker.o: No such file or directory
g++: error: /home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSOE.o: No such file or directory
g++: error: /home/zaka2936/OpenSees/SRC/system_of_eqn/linearSOE/diagonal/MPIDiagonalSolver.o: No such file or directory
g++: error: /home/zaka2936/lib/libOpenSees.a: No such file or directory
make[1]: *** [tcl] Error 1
make[1]: Leaving directory `/home/zaka2936/OpenSees/SRC/modelbuilder/tcl'
make: *** [all] Error 2

[rafal]

Changes in svn revision 6180 cause failure in compiling the sources. I suppose this change in Makefile indicates that e.g. basuElmt03.cpp or .f files should be present in */feap directory
$(FE)/element/feap/elmt01.o \
$(FE)/element/feap/elmt02.o \
- $(FE)/element/feap/elmt03.o \
+ $(FE)/element/feap/basuElmt03.o \
+ $(FE)/element/feap/fElmt03.o \
$(FE)/element/feap/elmt04.o \
+ $(FE)/element/feap/fElmt04.o \
$(FE)/element/feap/elmt05.o \
+ $(FE)/element/feap/elmt06.o \
+ $(FE)/element/feap/fElmt06.o \
+ $(FE)/element/feap/elmt41.o \
+ $(FE)/element/feap/fElmt41.o \

However I cannot find them there. So issuing 'make' fails to build e.g. basuElmt03.o file.